BtaEX6036171 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000575 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr8:105978106-105984075:-
Coord C1 exon
chr8:105983932-105984075
Coord A exon
chr8:105982711-105982841
Coord C2 exon
chr8:105978106-105978238
Length
131 bp
Sequences
Splice sites
3' ss Seq
AAATGTCTTCTCTTCTCCAGACC
3' ss Score
8.69
5' ss Seq
AAGGTATCT
5' ss Score
7.56
Exon sequences
Seq C1 exon
TGCCAGAAATTACCCGCACGGTGTCCGGGAACACGGTGGAGTATGCACTGACCAATCTCGAGCCTGCCACAGAATACACGCTGAGGATCTTTGCAGAGAAAGGGCCCCAGAAGAGCTCAACCATCACCACCAAGTTCACCACAG
Seq A exon
ACCTCGATTCTCCAAGAGACTTCACTGCTACAGAGGTTCAGTCGGAAACTGCCCTCCTCACCTGGAGACCTCCCCGGGCATCTGTCACTGGTTACCTATTGGTGTATGAATCCGTGGATGGTACAATCAAG
Seq C2 exon
GAAGTCGTTCTGGATCCAGACACCACCTCTTACAGCCTGACGGATCTGAGCCCATCCACCTACTACACAGCCAGGATTCAGGCACTGAACGGGACCCTAAGGAGCAAGACAGTCAAGACCATCTTCACCACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000575-'28-27,'28-26,29-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.114 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(50.6=81.6)
A:
PF0004116=fn3=PU(52.6=93.2)
C2:
PF0004116=fn3=PD(44.9=77.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGAAATTACCCGCACG
R:
CTCCTTAGGGTCCCGTTCAGT
Band lengths:
248-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]