DreEX6011166 @ danRer10
Exon Skipping
Gene
ENSDARG00000021948 | tnc
Description
tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]
Coordinates
chr5:27967872-27970899:-
Coord C1 exon
chr5:27970756-27970899
Coord A exon
chr5:27968107-27968237
Coord C2 exon
chr5:27967872-27968004
Length
131 bp
Sequences
Splice sites
3' ss Seq
ACTAATTCCCCCTTCCACAGATG
3' ss Score
9.68
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TGGCTCCGGTGATGGAAAGGGTGTCTGGGAACACGGTGGAGTTTGAGATGAGCTCCCTCACTCCTGCTACTTTATACACTGTTAAAGTCTATGCATTCCGAGACACAGCCAAGAGTGCGGCAACCAGCACTGACTTCACTACAG
Seq A exon
ATGTTGATGCCCCTCAGAATCTGGCCGCCAGTAACATTCAAACAGAGACCGCCATGTTGACGTGGAAGCCGCCAAGAGCAGACATCAGTGGGTACATCCTTAGCTTTGAGTCCGCTGATGGTGTAGTCAAG
Seq C2 exon
GAGGTGGTCCTCAGCCCCACAGCAACATTTTACAGCATGTCCCAGCTCACCGCCTCCACCGAGTACACAGTAAAACTGCAGGCCATCGCTGGACCAAAGAGAAGCAGAGTCATTTCTACAGTCTTCCTCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021948-'23-29,'23-28,24-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(51.2=83.7)
A:
PF0004116=fn3=PU(52.6=93.2)
C2:
PF0004116=fn3=PD(44.9=77.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGATGGAAAGGGTGTCTG
R:
GCTTCTCTTTGGTCCAGCGAT
Band lengths:
243-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]