RnoEX6022122 @ rn6
Exon Skipping
Gene
ENSRNOG00000058645 | Tnc
Description
tenascin C [Source:RGD Symbol;Acc:621057]
Coordinates
chr5:79796952-79800955:-
Coord C1 exon
chr5:79800812-79800955
Coord A exon
chr5:79799944-79800074
Coord C2 exon
chr5:79796952-79797084
Length
131 bp
Sequences
Splice sites
3' ss Seq
CTCCATACTGTCTTCTCCAGACC
3' ss Score
8.48
5' ss Seq
AAGGTATCT
5' ss Score
7.56
Exon sequences
Seq C1 exon
TGCCAGAAATTACCCGCACAGTGTCTGGGAATACAGTGGAGTTTGAACTACATGACCTGGAGCCTGCCACAGAGTACACACTGAGTGTCTTTGCAGAGAAAGGTCACCAGAAGAGTTCTACCATCGCTACGAAATTTACCACAG
Seq A exon
ACCTGGATTCCCCAAGAGAATTGACTGCTACTGAGGTTCAGTCAGAAACTGCCCTCCTCACCTGGAGACCTCCCCGGGCATCGGTCACTGGATACCTCCTGGTCTATGAGTCTGTGGATGGTACAGTCAAG
Seq C2 exon
GAAGTCATTGTGGGGCCTGACACCACCTCCTACAGCCTGGCAGACCTGAGCCCATCCACCCACTACACAGCAAGAATCCAGGCATTGAGTGGGTCCCTGAGGAGCAAACTGATCCAAACCATCTTCACCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058645-'33-47,'33-46,34-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.114 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(50.6=81.6)
A:
PF0004116=fn3=PU(52.6=93.2)
C2:
PF0004116=fn3=PD(44.9=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGAAATTACCCGCACAG
R:
CTCCTCAGGGACCCACTCAAT
Band lengths:
248-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]