HsaEX7005573 @ hg38
Exon Skipping
Gene
ENSG00000041982 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr9:115031553-115036241:-
Coord C1 exon
chr9:115036098-115036241
Coord A exon
chr9:115035204-115035334
Coord C2 exon
chr9:115031553-115031685
Length
131 bp
Sequences
Splice sites
3' ss Seq
AATCATCCTGTCTTCTCCAGACC
3' ss Score
9.67
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TGCCAGAAATTACACGCACGGTGTCCGGGAACACAGTGGAGTATGCTCTGACCGACCTCGAGCCTGCCACGGAATACACACTGAGAATCTTTGCAGAGAAAGGGCCCCAGAAGAGCTCAACCATCACTGCCAAGTTCACAACAG
Seq A exon
ACCTCGATTCTCCAAGAGACTTGACTGCTACTGAGGTTCAGTCGGAAACTGCCCTCCTTACCTGGCGACCCCCCCGGGCATCAGTCACCGGTTACCTGCTGGTCTATGAATCAGTGGATGGCACAGTCAAG
Seq C2 exon
GAAGTCATTGTGGGTCCAGATACCACCTCCTACAGCCTGGCAGACCTGAGCCCATCCACCCACTACACAGCCAAGATCCAGGCACTCAATGGGCCCCTGAGGAGCAATATGATCCAGACCATCTTCACCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041982-'42-49,'42-48,44-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.113 C2=0.000
Domain overlap (PFAM):
C1:
PF106044=Polyketide_cyc2=FE(28.9=100),PF0004116=fn3=PD(50.6=81.6)
A:
PF106044=Polyketide_cyc2=PD(23.2=64.4),PF0004116=fn3=PU(53.2=91.1)
C2:
PF106044=Polyketide_cyc2=PD(15.7=57.8),PF0004116=fn3=PD(44.2=75.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGAAATTACACGCACGG
R:
TCATATTGCTCCTCAGGGGCC
Band lengths:
256-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains