GgaEX1059500 @ galGal3
Exon Skipping
Gene
ENSGALG00000007113 | TNC
Description
NA
Coordinates
chr17:3040871-3042096:-
Coord C1 exon
chr17:3041953-3042096
Coord A exon
chr17:3041518-3041648
Coord C2 exon
chr17:3040871-3041003
Length
131 bp
Sequences
Splice sites
3' ss Seq
GTAATTTCTCTCTCCTTCAGGAC
3' ss Score
11.83
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
AGCCAGAAGTTACACAGATGGTATCAGGAAACACAGTGGAGTACGACCTGAATGGCCTTCGACCTGCGACAGAGTACACCCTGAGGGTGCATGCAGTGAAGGATGCGCAGAAGAGCGAGACCCTCTCCACCCAGTTCACTACAG
Seq A exon
GACTCGATGCTCCAAAAGATTTAAGTGCTACCGAGGTTCAGTCAGAAACAGCTGTGATAACGTGGAGGCCTCCACGTGCTCCTGTCACTGATTACCTCCTGACCTACGAGTCCATTGATGGCAGAGTCAAG
Seq C2 exon
GAAGTCATCCTAGACCCTGAGACGACCTCCTACACCCTGACAGAGCTGAGCCCATCCACTCAATACACAGTGAAACTTCAGGCACTGAGCAGATCTATGAGGAGCAAAATGATCCAGACTGTTTTCACCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007113-'22-21,'22-20,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=0.136 C2=0.022
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(50.6=81.6)
A:
PF0004116=fn3=PU(52.6=93.2)
C2:
PF0004116=fn3=PD(44.9=77.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGTGGAGTACGACCTGA
R:
TGTGGTGAAAACAGTCTGGATCA
Band lengths:
246-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]