BtaEX6036240 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016952 | PSMD5
Description
Bos taurus proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 (PSMD5), mRNA. [Source:RefSeq mRNA;Acc:NM_001075693]
Coordinates
chr8:112103246-112108899:-
Coord C1 exon
chr8:112108771-112108899
Coord A exon
chr8:112107134-112107243
Coord C2 exon
chr8:112103246-112103388
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTTCTTTCTCTCAGCTG
3' ss Score
10.79
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCCATTAAATCCCTGTCAAGAATATCACTGACCCAAGCTGGACTGGAGGCTTTATTTGAAAGTAATCTGCTGGATGATTTGAAAAGTGTCATGAAAACAAATGACATTGTTCGGTATAGAGTGTATGAG
Seq A exon
CTGATTGTGGAGATCTCTTCTGTGTCACCAGAGTCTCTGAACTGCTGTACCACCAGTGGGTTGGTAACCCAGCTCCTCCGAGAACTGACTGGTGAGGATGTGCTGGTCAG
Seq C2 exon
AGCCACCTGTATAGAAATGGTGACATCGCTGGCCTGTACTCATCATGGACGACAGTACCTTGCTCAAGAAGGAGTCATTGATCAGATTTCTAACATAATTGTTGGGGCAGATGCAGACCCTTTCTCTAGCTTCTATTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016952-'4-6,'4-3,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=FE(8.3=100)
A:
PF105084=Proteasom_PSMB=FE(7.1=100)
C2:
PF105084=Proteasom_PSMB=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTCAAGAATATCACTGACCC
R:
GAGAAAGGGTCTGCATCTGCC
Band lengths:
245-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]