GgaEX6015500 @ galGal3
Exon Skipping
Gene
ENSGALG00000001637 | PSMD5
Description
NA
Coordinates
chr17:8974893-8975834:-
Coord C1 exon
chr17:8975706-8975834
Coord A exon
chr17:8975146-8975255
Coord C2 exon
chr17:8974893-8975035
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTGTTTTTATTTAGCTA
3' ss Score
8.83
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCCATCAAATCTCTCTCAAGAATAGCCCAAACACAAGATGGCTTAGAGGCTTTGTTTGTGAGCAGCTTGTTAAGTGACTTGAAAAATGTCATGGCAACAAATGATGTTGTTCGGTACAGAGTGTATGAG
Seq A exon
CTAATTGTTGAGATATCTTCAGTGTCAGCAGATTCACTTAATTACTGTGCAAACAGTGGGTTAATATCAGACTTAATTGGAGAGTTGACTGGAGATGACGTTCTGGTCAG
Seq C2 exon
AGCTACGTGCATAGAGATGGTGACTTCACTGGCACATAGTCCCCATGGACGTCAGTATCTTGCTCAGCAAGGAATTATTGATAAGATTTCTAACATCATCATTGGTGCAGAGTCTGATCCTTTCTCAGGCTTCTACTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001637-'4-4,'4-3,5-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=FE(8.3=100)
A:
PF105084=Proteasom_PSMB=FE(7.1=100)
C2:
PF105084=Proteasom_PSMB=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAAACACAAGATGGCTT
R:
AGTAGAAGCCTGAGAAAGGATCAGA
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]