DreEX0059001 @ danRer10
Exon Skipping
Gene
ENSDARG00000059046 | psmd5
Description
proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 [Source:ZFIN;Acc:ZDB-GENE-050417-28]
Coordinates
chr21:5209616-5210231:-
Coord C1 exon
chr21:5210103-5210231
Coord A exon
chr21:5209916-5210025
Coord C2 exon
chr21:5209616-5209758
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCATATGAACGTGTGTTCAGTTG
3' ss Score
4.52
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GCGATCGCCGCACTTAGTAAACTCAGCAACACGAAGGCGGGGCTTGATGCTTTGTTCCGCTCTGATTTGCTGAACAAGCTGAAGGATGTGATGCTCACCAGTGACATCATCAGATACAGAGTCTATGAG
Seq A exon
TTGATAGTGGAGGTGTCTACAGTTTCTCCAGTGTCTCTGGGCTACTGCGCTAACAGCGGCTTAATCTCACAGATGCTGGAGGAGCTGACTGGAGATGATGTGTTGGTCAG
Seq C2 exon
AGCAACTGCTATAGAGATGGTGACCAATTTGGCTCAGAGCCAACATGGCCGTCAGTATCTGGCACAACAAGGCATTATGGATAAAATCTCCAACATGATCATCGCTGCTGAATCGGACACCTTCTCAAGCCTTTACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059046-'5-5,'5-3,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=FE(8.3=100),PF124633=DUF3689=PU(17.8=60.5)
A:
PF105084=Proteasom_PSMB=FE(14.0=100),PF060257=DUF913=FE(22.9=100)
C2:
PF105084=Proteasom_PSMB=FE(9.5=100),PF124633=DUF3689=FE(32.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTCAGCAACACGAAGGCG
R:
AGGCTTGAGAAGGTGTCCGAT
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]