HsaEX0050626 @ hg38
Exon Skipping
Gene
ENSG00000095261 | PSMD5
Description
proteasome 26S subunit, non-ATPase 5 [Source:HGNC Symbol;Acc:HGNC:9563]
Coordinates
chr9:120826765-120831459:-
Coord C1 exon
chr9:120831331-120831459
Coord A exon
chr9:120829099-120829208
Coord C2 exon
chr9:120826765-120826907
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTTTTTATTTCAGCTA
3' ss Score
9.98
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCTATCAAATCCCTGTCAAGAATATCACTAACCCAAGCTGGACTGGAGGCTTTATTTGAAAGCAATCTGCTGGATGATTTGAAAAGTGTAATGAAAACAAATGACATTGTTCGATACAGGGTGTATGAG
Seq A exon
CTAATTATAGAGATTTCTTCCGTGTCACCAGAATCTTTAAACTACTGTACCACAAGTGGATTGGTAACCCAGCTCCTGAGAGAGCTGACTGGTGAGGATGTGTTGGTCAG
Seq C2 exon
AGCCACCTGTATAGAAATGGTGACATCACTGGCATATACTCATCATGGGCGACAATATCTTGCTCAAGAAGGAGTAATTGACCAAATTTCTAATATAATTGTTGGGGCAGATTCAGACCCTTTCTCTAGCTTCTATCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095261-'15-13,'15-11,19-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=FE(21.2=100)
A:
PF105084=Proteasom_PSMB=FE(11.3=100)
C2:
PF105084=Proteasom_PSMB=FE(15.1=100)
Main Skipping Isoform:
ENST00000210313fB23593
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAACCCAAGCTGGACTGGA
R:
GGCAGATAGAAGCTAGAGAAAGGG
Band lengths:
244-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development