RnoEX0070698 @ rn6
Exon Skipping
Gene
ENSRNOG00000018809 | Psmd5
Description
proteasome 26S subunit, non-ATPase 5 [Source:RGD Symbol;Acc:1308434]
Coordinates
chr3:13925621-13928337:-
Coord C1 exon
chr3:13928209-13928337
Coord A exon
chr3:13927528-13927637
Coord C2 exon
chr3:13925621-13925763
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTGTCTCTCTGTTCTTTCAGCTA
3' ss Score
11.05
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCTATCAAATCCCTGTCAAGAATATCACTAACCCAAGCTGGACTGGAAGCTCTATTTGAAAGTAATTTGCTGGACGATTTGAAAAATGTCATGAAAACAAATGATGTTGTTCGATACAGGGTGTATGAG
Seq A exon
CTAATTATAGATATTTCTTCTGTGTCATCAGAATCGTTAAATTACTGTACCACAAGTGGACTGGTGACCCAGCTCCTGAGAGAGCTGACGGGTGAGGACGTGTTAGTCAG
Seq C2 exon
AGCCACCTGTATCGAAATGGTGACATCACTAGCATATACCCATCATGGACGACAATACTTGGCTCAAGAAGGAGTCATTGACCAGATATCCAATATAATTGTTGGTGCAGATTCAGACCCTTTCTCTGGCTTCTATCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018809-'4-7,'4-4,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=FE(12.3=100)
A:
PF105084=Proteasom_PSMB=FE(10.6=100)
C2:
PF105084=Proteasom_PSMB=FE(14.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAACCCAAGCTGGACTGGA
R:
GCAGATAGAAGCCAGAGAAAGGG
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]