BtaEX6036286 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012210 | C5
Description
complement C5a anaphylatoxin precursor [Source:RefSeq peptide;Acc:NP_001160088]
Coordinates
chr8:112247521-112249941:-
Coord C1 exon
chr8:112249836-112249941
Coord A exon
chr8:112248502-112248585
Coord C2 exon
chr8:112247521-112247610
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTGCGCTTTCATCGCCACAGATA
3' ss Score
9.29
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
ATTCCTTCCAACGAGTTCCTTTGTGTTCGATTCCGGATAATTGAACTTTTTGAAGTTGGGTTTCTGAGCCCTGCCACCTTCACAGTGTATGAGTACCACAGACCAG
Seq A exon
ATAAACAGTGCACCATGTTTTACAGCACGTCGAACACCAAGCTTCAGAAAGTCTGTGAAGGAGTAACGTGCAAATGTATCGAAG
Seq C2 exon
CTGACTGTGGGCAAATGCAGGCAGAATTGGACCTGACAATCTCTGCAGCTACTAGAAAGGAAACAGCATGTAAACCGGAGATTGCATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012210-'51-53,'51-49,52-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(38.5=100)
A:
PF076779=A2M_recep=PD(7.7=24.1)
C2:
PF0175916=NTR=PU(9.1=32.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTTGTGTTCGATTCCGGA
R:
TGCAATCTCCGGTTTACATGCT
Band lengths:
176-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]