RnoEX6016571 @ rn6
Exon Skipping
Gene
ENSRNOG00000018899 | C5
Description
complement C5 [Source:RGD Symbol;Acc:2237]
Coordinates
chr3:14056401-14058360:-
Coord C1 exon
chr3:14058255-14058360
Coord A exon
chr3:14057130-14057213
Coord C2 exon
chr3:14056401-14056490
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCATATCTCCATTCTCACAGATA
3' ss Score
8.3
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATTCCCTCCAGAGATTTCCTTTGTGTTCGGTTCCGGATATTTGAACTTTTCCAAGTTGGGTTTCTGAATCCTGCTACGTTCACGGTGTACGAGTATCACAGACCAG
Seq A exon
ATAAGCAGTGTACCATGATTTACAGCACTTCTGACACCAACCTTCAGAGAGTCTGTGAAGGAGCGGCATGCAAATGCGTTGAAG
Seq C2 exon
CTGATTGTGGGCAACTGCAGGCAGAACTGGACCTGGCCATCTCTGCAGACACCAGGAAAGAAACAGCATGTAAACCAGAGATTGCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018899-'49-55,'49-54,50-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(38.5=100)
A:
PF076779=A2M_recep=PD(7.7=24.1)
C2:
PF0175916=NTR=PU(9.0=32.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTTTGTGTTCGGTTCCGG
R:
TGCAATCTCTGGTTTACATGCTGT
Band lengths:
177-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]