DreEX0017788 @ danRer10
Exon Skipping
Gene
ENSDARG00000021004 | c5
Description
complement component 5 [Source:ZFIN;Acc:ZDB-GENE-120510-2]
Coordinates
chr5:62764794-62768979:-
Coord C1 exon
chr5:62768874-62768979
Coord A exon
chr5:62768689-62768772
Coord C2 exon
chr5:62764794-62765025
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTTATCTTAATTTTTTAGCAT
3' ss Score
9.34
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATACCATCAGATAACTTCTACTGCGTGGGCTTCCGTATCCTAGAGGAATTTGAAACTGGCATGACCAAAGCCTCAGAGTTTACTGTATATGAATATCAAGCTCCAG
Seq A exon
CATTTAAGTGCACAAAGTTGTACCAGAAACAAACCCGCAAGCTGTTACGACTCTGTGAGGAAGACCATTGTCAGTGCATGGCAG
Seq C2 exon
GTACAAGTTCCCTTTGGACTCTGAAGCTTGGGTGGACTGGTGGCCGCTTGAATCTGACTGCAGCGATGCTAACTGCAAACAATATGTCAAAGTTTTGGAAGGATTTGAATTTGAATACTTATTAAATGGCTGTGATTTGATGTCATCTCGATAGGACTGGTACTTCATGTGTACGTTTTTATTCTTTGAAAAACAAATTCAAAATAAGAATAAAACGAAGCATTTAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021004_MULTIEX1-16/19=15-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(38.5=100)
A:
PF076779=A2M_recep=PD(7.7=24.1)
C2:
PF0175916=NTR=PD(23.9=51.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGATAACTTCTACTGCGTGGG
R:
TCGCTGCAGTCAGATTCAAGC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]