GgaEX6015532 @ galGal3
Exon Skipping
Gene
ENSGALG00000001565 | C5
Description
NA
Coordinates
chr17:9024438-9025211:-
Coord C1 exon
chr17:9025106-9025211
Coord A exon
chr17:9024831-9024917
Coord C2 exon
chr17:9024438-9024527
Length
87 bp
Sequences
Splice sites
3' ss Seq
TATCTTTTTGGATCTTGTAGATA
3' ss Score
8.04
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GTGCCAGCTGATCGCTTCCTCTGTGTTGGGTTCAGAATTAGTCAGCTTTTCCATGTTGGAATGCTAAATCCTGGCACATTCAGTGTATATGAGTATCACGCACCTG
Seq A exon
ATAAACGATGCACTGTATTTTATAACCCATATGGAAATGAAAAACTTGTGAGATTGTGTGAAGGAGATGAATGCAAATGCATGGAAG
Seq C2 exon
CCGAGTGTAGCAAAGTACAAGAAAGACTAGATCAGTCAATAACTGCTGATACCAGGAGAGAAGTTGCATGCCAGAATGATATTGCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001565-'43-43,'43-42,44-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(38.5=100)
A:
PF076779=A2M_recep=PD(7.7=23.3)
C2:
PF0175916=NTR=PU(9.1=32.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGCTTCCTCTGTGTTGGG
R:
GGCATGCAACTTCTCTCCTGG
Band lengths:
169-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]