MmuEX6100794 @ mm9
Exon Skipping
Gene
ENSMUSG00000026874 | Hc
Description
hemolytic complement [Source:MGI Symbol;Acc:MGI:96031]
Coordinates
chr2:34844669-34846615:-
Coord C1 exon
chr2:34846510-34846615
Coord A exon
chr2:34845394-34845477
Coord C2 exon
chr2:34844669-34844758
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCTCTGTCCTCACAGATA
3' ss Score
11.72
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATCCCCTCCAGAGATTTCCTCTGTGTCCGGTTCCGGATATTTGAACTTTTCCAAGTTGGGTTTCTGAATCCTGCTACCTTCACGGTGTACGAGTATCACAGACCAG
Seq A exon
ATAAGCAGTGCACCATGATTTATAGCATTTCTGACACCAGGCTTCAGAAAGTCTGTGAAGGAGCAGCTTGCACATGTGTGGAAG
Seq C2 exon
CTGACTGTGCGCAACTGCAGGCAGAAGTAGACCTAGCCATCTCTGCAGACTCCAGAAAAGAGAAAGCCTGTAAACCAGAGACTGCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026874-'43-44,'43-43,44-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(38.5=100)
A:
PF076779=A2M_recep=PD(7.7=24.1)
C2:
PF0175916=NTR=PU(9.1=32.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATTTCCTCTGTGTCCGGT
R:
ACAGGCTTTCTCTTTTCTGGAGT
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: