BtaEX6036299 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112479236-112481501:+
Coord C1 exon
chr8:112479236-112479395
Coord A exon
chr8:112481088-112481203
Coord C2 exon
chr8:112481284-112481501
Length
116 bp
Sequences
Splice sites
3' ss Seq
CCATGCTTTGTTTCTCTTAGAAC
3' ss Score
8.43
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
GAACTAAAAGGTCTTCTGGAAGAACTGAGTTTTCAGAAAGGAGAACTGAATGTCCAGATTAGTGAGAAAAAAAATCAACTTTCACTTTTAAAGCAAGAAATTGAAAAAGAGGAAGAAAATCTTCAGGTAGTTTTAGGGCAGATGTCTAAACATAAAACTG
Seq A exon
AACTTAAGAATATTCTGGACATGTTGCAACTTGAAAACAATGAGCTGCAAGCTTTGAAGCTACAGCATGAGCAAAAGATGTCTGAGTTAGAGAAGACTCAGGTTGACGTGCTGGAG
Seq C2 exon
GAGAAACTGCAGTTGGAGAATTTGCAGCAGACAGCCCTGCGACAGAAAGGGGAGATGGAGTGGCAGAAGCAGGTCTTAGAGAGGGACAAGCGCGAGACTGAGCGGGTAACTGCTGAGGCCCGAGCGTCGCGGCTGTGTGTTGAATCTTTGTGCAAACAAAAGGAAGATCTCGAGGAGAAATGTGACAGCTGGGAGAGGAAGCTGGCACAGACCAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417-'41-50,'41-49,42-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.103 C2=0.082
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCAGGTAGTTTTAGGGCAGA
R:
CTTCCTCTCCCAGCTGTCACA
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]