MmuEX0010883 @ mm10
Exon Skipping
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35162761-35165865:+
Coord C1 exon
chr2:35162761-35162920
Coord A exon
chr2:35165447-35165562
Coord C2 exon
chr2:35165648-35165865
Length
116 bp
Sequences
Splice sites
3' ss Seq
CCCTGTTTTGTCTCTGTCAGAAC
3' ss Score
9.36
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
GAAGTAAAATCACTTCTGGAAGAACTAAGTTTTCAGAAAGGAGAACTGAATGTCCACATCAGTGAAAAGAAGACTCAGCTCGCACTTATACAGCAGGAGATGGAGAAAGAGGAAAAGAATCTTCAGGTGGTTTTACAGCAGCTGTCGAGACATAAGACTG
Seq A exon
AACTAAAGAATGTTGCAGACATACTGCAGCTTGAAACCAGCGAGCTCCAAGGTCTGAAGCTCCAGCATGACCAGAAGGTGGTGGAGCTGGAGAAGGCGCAGGTGGACGTGCTGGAG
Seq C2 exon
GAGAAACTAGAGCTGGAGAATTTGCAGCAGGCAACGCAGCAGCAGAGAAGGGAGCTAGAGCGGCAGAGACAGCTCCTGGAGAGAGACAGGCGGGAGACAGAGCGAGTGAGGGCAGAGAGCCAGGCCCTGCAGTCCTGCGTCGAATGTCTGAGTAAAGAAAAGGAGGATCTCCAAGGACAGTGCGAGAGCTGGGAAAAGAAGTCTTCCCACGCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-'64-75,'64-72,67-75
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.233
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTTACAGCAGCTGTCGA
R:
GGGCGTGGGAAGACTTCTTTT
Band lengths:
247-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types