GgaEX6015538 @ galGal4
Exon Skipping
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8368151-8369706:+
Coord C1 exon
chr17:8368151-8368310
Coord A exon
chr17:8369152-8369267
Coord C2 exon
chr17:8369489-8369706
Length
116 bp
Sequences
Splice sites
3' ss Seq
GATTTCTTTCATCTTATTAGAAC
3' ss Score
6.81
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAAATAAAGCTCCTTCTGGAAGATCTTAATGCTGAGAGGAGAGAACTGGATGTCCAAATTGATGAGAAGAGAGCACAGCTTTTGTTCATAAAAAAGGATATTGGAAAAGAGGAAGAAAATCTTCAAATAATACTTGGACAAATTAACAAGCATAAGCTAG
Seq A exon
AACTGAAACATGTTCTGGAAATGTTGGAGATAGAAAATAATGAACTTCAGGGTTTGAAACTACAACATAATCAAAAGGTCAATGAACTAGAGAAGACTCAGGTTGCAGTTCTAGAA
Seq C2 exon
GAGAAGTTAAAATTGGAGAATATTCAGAGATTATTTCATTGTCAGCAAGGGGAAGTAGACTGGCAGGAACAACTACTTCAGAAGGACCGCCAGGAAAATGAACATCTGGTTTCTCAAATGCGCACTCTGCAAAATAATATTGAGTCTCTGAATAAGGAAAAGCAAAAGCTTGAAGAGGACTGTCAGAGTTTGGAAAAGAAGCTGTCACAAACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513-'49-44,'49-43,51-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.051 C2=0.281
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127182=Tropomyosin_1=PU(45.3=65.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAGAGGAGAGAACTGGA
R:
AGTGCGCATTTGAGAAACCAGA
Band lengths:
257-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]