DreEX6014126 @ danRer10
Exon Skipping
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62719026-62721721:-
Coord C1 exon
chr5:62721562-62721721
Coord A exon
chr5:62719318-62719433
Coord C2 exon
chr5:62719026-62719234
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGGAATTTGTGTGCATTTAGAGC
3' ss Score
5.84
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GAGCTCCGTGTGGATGTGCATTCTCTGGCCGTGCAGAAGGGAGAGCTGGACTCTCAGCTGTCTGAGAGGAAAACCAGGCTGGCACAGTTGAAGAAAGACCAGCAGCAGGAAGAGGAAACCTTGCAGAGCCTTCGCTCAGTCATCAAAAAACACAAAGCAG
Seq A exon
AGCTGGCACGCATGTTGGAAATGATCCAGCTGGAAACTGGAGAATTAGAGGATGTGAAGCTTCAATGTAACCAGAAACTGGAGCAACTAGAGAAGAGCCAGGAAACTCTTCTGCAG
Seq C2 exon
GTGCGTGTGGAACTGCAGTGTGTGCAGCAGGAGCTTCAGGAGCAGCGTGAAGAGGCTGAGAGACAGATGGAGAAAGACAGAGTAGAGCTGCACTCGCTCCAGCAGAAGAGCCTCCACCTGCAACAGCAAACAGAGGCAGCAGTTCAAGAGAGGAGCAGCCTGCAGGAACAGTGCCGAAACCTGGAGGCCAGACGCACACATGCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492-'38-42,'38-41,39-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.464
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGAGGAAAACCAGGCTGG
R:
TCCTCTCTTGAACTGCTGCCT
Band lengths:
253-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]