MmuEX0010883 @ mm9
Exon Skipping
Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35018281-35021385:+
Coord C1 exon
chr2:35018281-35018440
Coord A exon
chr2:35020967-35021082
Coord C2 exon
chr2:35021168-35021385
Length
116 bp
Sequences
Splice sites
3' ss Seq
CCCTGTTTTGTCTCTGTCAGAAC
3' ss Score
9.36
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
GAAGTAAAATCACTTCTGGAAGAACTAAGTTTTCAGAAAGGAGAACTGAATGTCCACATCAGTGAAAAGAAGACTCAGCTCGCACTTATACAGCAGGAGATGGAGAAAGAGGAAAAGAATCTTCAGGTGGTTTTACAGCAGCTGTCGAGACATAAGACTG
Seq A exon
AACTAAAGAATGTTGCAGACATACTGCAGCTTGAAACCAGCGAGCTCCAAGGTCTGAAGCTCCAGCATGACCAGAAGGTGGTGGAGCTGGAGAAGGCGCAGGTGGACGTGCTGGAG
Seq C2 exon
GAGAAACTAGAGCTGGAGAATTTGCAGCAGGCAACGCAGCAGCAGAGAAGGGAGCTAGAGCGGCAGAGACAGCTCCTGGAGAGAGACAGGCGGGAGACAGAGCGAGTGAGGGCAGAGAGCCAGGCCCTGCAGTCCTGCGTCGAATGTCTGAGTAAAGAAAAGGAGGATCTCCAAGGACAGTGCGAGAGCTGGGAAAAGAAGTCTTCCCACGCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110_MULTIEX2-1/7=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.233
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTTACAGCAGCTGTCGA
R:
GGGCGTGGGAAGACTTCTTTT
Band lengths:
247-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: