BtaEX6036302 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112476947-112478316:+
Coord C1 exon
chr8:112476947-112477087
Coord A exon
chr8:112477190-112477316
Coord C2 exon
chr8:112478152-112478316
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTACTGCTGGCGCTTTGTAGGCT
3' ss Score
6.24
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
ATTGTTGCAGGCGGACACAAAGGATTTGGAGCAGCACAGAACCGAGCAAGAAGAAATCTTGAAAGAGATAAACAAAGTTGTTGCAGCAAAAGACTCAGACTTCCAGTGTTTAAACACGAAGAAGGAAAAACTAACAGAAGA
Seq A exon
GCTGCAGAAGCTGCAGAAAGACATCGAGACGGCAGTGCGCACTGAGGATCACCACCTGCAGGTCCTGAGAGAGTCGGAGGCCCTCCTGCAGGCCAAGAGAGCGGAGCTGGACAAGCTGAGGAGCCAG
Seq C2 exon
GTAACGGGTCAGCAGCAGGAGATGGCTGTCTTGGACAGACAGCTGGGGCATAAGAAGGAGGAGCTGCATCTACTCCAGGGAAGCATGGTCCAGGCCAGAGCTGACCTCCAGGAAGCGCTGAGGCTGGGAGAAACTGAAGTAACTGAGAAGTGCAACCACATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417-'36-47,'36-45,37-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.209 C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGACACAAAGGATTTGGA
R:
CTTCCTGGAGGTCAGCTCTGG
Band lengths:
247-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]