GgaEX1016165 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:9070456-9071563:+
Coord C1 exon
chr17:9070456-9070542
Coord A exon
chr17:9070738-9070864
Coord C2 exon
chr17:9071399-9071563
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCTTTTATCTTCTCTGTAAGTCT
3' ss Score
4.46
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TATTTTGAAGGAAATCAACAAAATGGTGTCTGCAAGAGACTCTGATTTCCAGTCCTTAAACCAGAAAATAGAAATGCTGACTGAAAG
Seq A exon
TCTTCAGAAGCTTCAAGGAGATATTCAAGCTGCAGAAGGTAATGAAGAACATCACCTCCAAATGCTCAGAGAAGTGGAGGACATTCTTCAGGTCAAGAAAACTGAACAGGAGAGACTGAAAAATCAG
Seq C2 exon
GTTACTGCTCAGCAACAAGAGCTGTTGTTTCTGGAGCAGCAGTTAAGTCAAAGGAAAGAACAGCTCCGTGTCCTTCAGGACTGTATTTCTCAAAAGAAAGGTGACCTCAAAGAAGCTCTTCGAGATGGGGAGACTGAAGCAAAGGAAAAACAGCGCCAAATAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513-'10-11,'10-9,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.093 C2=0.200
Domain overlap (PFAM):
C1:
PF047288=LPP=PU(50.0=76.7)
A:
PF047288=LPP=PD(47.8=51.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAGGAAATCAACAAAATGGTGT
R:
TTGGCGCTGTTTTTCCTTTGC
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]