GgaEX1016165 @ galGal4
Exon Skipping
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8366201-8367362:+
Coord C1 exon
chr17:8366201-8366341
Coord A exon
chr17:8366537-8366663
Coord C2 exon
chr17:8367198-8367362
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCTTTTATCTTCTCTGTAAGTCT
3' ss Score
4.46
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATCATTACAGGCAGATACGCGGGATTTAGAACAGCATAAGAAGGAACAAGAAGGTATTTTGAAGGAAATCAACAAAATGGTGTCTGCAAGAGACTCTGAGTTCCAGTCCTTAAACCAGAAAATAGAAATGCTGACTGAAAG
Seq A exon
TCTTCAGAAGCTTCAAGGAGATATTCAAGCTGCAGAAGGTAATGAAGAACATCACCTCCAAATGCTCAGAGAAGTGGAGGACATTCTTCAGGTCAAGAAAACTGAACAGGAGAGACTGAAAAATCAG
Seq C2 exon
GTTACTGCTCAGCAACAAGAGCTGTTGTTTCTGGAGCAGCAGTTAAGTCAAAGGAAAGAACAGCTCCGTGTCCTTCAGGACTGTATTTCTCAAAAGAAAGGTGACCTCAAAGAAGCTCTTCGAGATGGGGAGACTGAAGCAAAGGAAAAACAGCGCCAAATAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513-'46-41,'46-39,47-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.396 A=0.419 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTACAGGCAGATACGCGGG
R:
AGAGCTTCTTTGAGGTCACCT
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]