RnoEX6016584 @ rn6
Exon Skipping
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14353704-14354402:+
Coord C1 exon
chr3:14353704-14353844
Coord A exon
chr3:14353960-14354086
Coord C2 exon
chr3:14354238-14354402
Length
127 bp
Sequences
Splice sites
3' ss Seq
AATCCTGCCCTGCCATGTAGGCT
3' ss Score
6.76
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATTGCTCCAGGCTGATGCAGAAGACTTGGAGCAACACAAAATCAAACAAGAAGAAATCTTGAAAGAAATAAACAAAGTTGTAGCAGCCAAAGATGCTGATTTCCAGTGTCTAAACGAGAAGAAGGAAAAACTGACAGAAGA
Seq A exon
GCTTCAAAGTCTGCAGAGAGACATCAAGGCAGCGGAAGTCAATGAGGATCACCACCTTCAGGTTCTTAAGGAATCTGAGAGTCTCCTTCAGGCCAAGAGAGCTGAGCTGGAAACACTGAAAAGCCAG
Seq C2 exon
GTGACAAGCCAGCAGCAGGAGTTGGCTGTCCTAGACTCACAGCTGGGGCACAGAAGGGAAGAGCTGCTTCTACTCCAGGACAGCCTCACCCAGGCAAAAGCTGACCTCCAGGAAGCCCTGACACTGGGGGAGACGGAAGTTGCCGAGAAGTGCAGTCACATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-'40-58,'40-57,41-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGCTGATGCAGAAGACT
R:
TTCCTGGAGGTCAGCTTTTGC
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]