DreEX6014124 @ danRer10
Exon Skipping
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62721805-62724698:-
Coord C1 exon
chr5:62724558-62724698
Coord A exon
chr5:62723482-62723608
Coord C2 exon
chr5:62721805-62721969
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTCCTGTATTTATAGACT
3' ss Score
7.94
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAGTCTTCAAGAGGAGGTTATGACGCTGCAGAAAAGGAAAGAGGACAAGGAACGCTCTCTACATGATGCTGAGGAGGTCCTTACATGTCATGATTCAAAGTTTCAAGACGTTAGCAGAAAGCTGGAGAGAGCGAATGACAG
Seq A exon
ACTGGAAATTGCCGAGAAGGAGCTCCGAGAGACGCAGAGCATGGAGGTGAAACTGTTGCAGAGCTGCAGAGAGATGGAAAACAGCCTAGCACAGCGCAAAACAAAACTGGATGAAGTCAACACTCAG
Seq C2 exon
GTGATGTTGCAGCAGAAGGAGCTGTCTTTGCTGGACAGGAAGCTGGAGCAGTGGAAACGGGAAGAGGAAGTGTTGAGAGTTAGTGTGGAGCAGCACAGGCAGGCCCTGCTGGATGTGCTCAGACAGGGAGAGGAGGATGCGAAACTCTTGCAACAACGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492-'34-39,'34-38,35-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.458 A=0.279 C2=0.000
Domain overlap (PFAM):
C1:
PF041569=IncA=FE(42.0=100)
A:
PF041569=IncA=FE(37.5=100)
C2:
PF041569=IncA=PD(1.8=3.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGTTATGACGCTGCAG
R:
CTGTCTGAGCACATCCAGCAG
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]