BtaEX6036630 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015144 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
chr7:3615801-3616300:+
Coord C1 exon
chr7:3615801-3615926
Coord A exon
chr7:3616019-3616083
Coord C2 exon
chr7:3616193-3616300
Length
65 bp
Sequences
Splice sites
3' ss Seq
CCCCTGCTGTCTACCCCCAGAGC
3' ss Score
11.33
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
GGGAGGAACTGGACTTGCGGCTCATCCGAACCAAGGGGGGCGTGGATGCAGCCCTGGAGTATGCCAAGACCTGGAGCCGCTACGTCAAGGATTTGCTGGCCTGGACTGAGAAGAGAGCCAGTTACG
Seq A exon
AGCTGGAGTTTGCCAAAAACATCATGAAGATTGCTGAGGCTGGCAAGGTGTCAATCCAGCAGCAG
Seq C2 exon
AGCCAAATGTCATTGCAATATATCTACCTCCTGTTTCTGGAGCACGACCTCAGCCTAGGAAACCTGGCCATGGAGACACTGGCCCAGCAGAAAAGAGACTACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015144-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGAGTATGCCAAGACCT
R:
GTCTCTTTTCTGCTGGGCCAG
Band lengths:
174-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]