DreEX6018960 @ danRer10
Exon Skipping
Gene
ENSDARG00000077249 | gmip
Description
GEM interacting protein [Source:ZFIN;Acc:ZDB-GENE-130530-823]
Coordinates
chr3:52509181-52518216:+
Coord C1 exon
chr3:52509181-52509306
Coord A exon
chr3:52514033-52514097
Coord C2 exon
chr3:52518109-52518216
Length
65 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTTGTTTGTTTACAGAGC
3' ss Score
9.3
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CCCAGGATGCTGACCTGAGCCTCTGCCACTGCGAGGATGGCGTGGAGCTTGCCCTGCAGTACGCCAAAATGTGGTGCCGCTACGCCAAAGACCTGCTCACCTGGATGGACAAGAGAATCAGCCTAG
Seq A exon
AGCAAGAGTTTGCAAAAAGTATTATGAGAGCGGCAGATGCAGCCAAGTCATGTGTTGCTCAACAG
Seq C2 exon
GATATGATGCCTCTACAGAATATCTACACACAGGCGCTGGAGCATGATCTCAAGACCAGCGCATCAGCCAAACAAAGCGCTGAAAACATACAACAGCGCTGCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077249-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0061118=FCH=PU(42.2=88.4)
A:
PF0061118=FCH=FE(23.3=100)
C2:
PF0061118=FCH=PD(32.2=80.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCAGTACGCCAAAATGT
R:
TGGTAGCAGCGCTGTTGTATG
Band lengths:
182-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]