HsaEX0027789 @ hg38
Exon Skipping
Gene
ENSG00000089639 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
chr19:19640085-19640571:-
Coord C1 exon
chr19:19640446-19640571
Coord A exon
chr19:19640296-19640360
Coord C2 exon
chr19:19640085-19640192
Length
65 bp
Sequences
Splice sites
3' ss Seq
CCGGCTCTCTCTTCCCCCAGAGC
3' ss Score
11.84
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
Exon sequences
Seq C1 exon
GGGAGGAACTGGACTTGCGGCTCATTCGGACAAAGGGGGGTGTGGACGCAGCCCTGGAATATGCCAAGACCTGGAGCCGCTATGCCAAGGAACTGCTTGCCTGGACTGAAAAGAGAGCCAGCTATG
Seq A exon
AGCTGGAGTTTGCTAAGAGCACCATGAAGATCGCTGAAGCTGGCAAGGTGTCCATTCAACAGCAG
Seq C2 exon
AGCCACATGCCTCTGCAGTACATCTACACCCTGTTTCTGGAGCACGATCTCAGCCTGGGAACCCTGGCCATGGAGACAGTGGCCCAGCAGAAAAGAGACTACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089639_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGGACTTGCGGCTCATTC
R:
GATCGTGCTCCAGAAACAGGG
Band lengths:
169-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development