MmuEX6036002 @ mm10
Exon Skipping
Gene
ENSMUSG00000036246 | Gmip
Description
Gem-interacting protein [Source:MGI Symbol;Acc:MGI:1926066]
Coordinates
chr8:69811158-69811640:+
Coord C1 exon
chr8:69811158-69811283
Coord A exon
chr8:69811368-69811432
Coord C2 exon
chr8:69811533-69811640
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTCTCCTCCTCCTAGAGC
3' ss Score
10.73
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
AGGAAGAACTGGATTTGCGACTCATTCGGACCAAGGGTGGTGTAGATGCTGCCCTGGAGTATGCTAAAGCATGGAGCCGCTATGCCAAGGAACTGCTGGCCTGGACAGACAAGAGAGCCAACTACG
Seq A exon
AGCTCGAGTTTGCTAAGAGTATCATGAAGCTCGCTGAGGCTGGCAAGGTGTCCATTCTCCAGCAG
Seq C2 exon
AGCCAAATGCCACTCCAGTACATCTACACCTTGTTTCTGGAGCATGACCTCAGCCTGGGAGCCCTGGCCCTGGAGACAGTGGCCCAACAGAAGAGAGACTACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036246-'9-12,'9-9,10-12
Average complexity
S
Mappability confidence:
89%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGCCCTGGAGTATGCTA
R:
CTTCTGTTGGGCCACTGTCTC
Band lengths:
174-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types