RnoEX6055349 @ rn6
Exon Skipping
Gene
ENSRNOG00000027257 | Gmip
Description
Gem-interacting protein [Source:RGD Symbol;Acc:1565577]
Coordinates
chr16:21360044-21360510:-
Coord C1 exon
chr16:21360385-21360510
Coord A exon
chr16:21360236-21360300
Coord C2 exon
chr16:21360044-21360151
Length
65 bp
Sequences
Splice sites
3' ss Seq
CGTTGTCTCTTCTCCCTTAGAGC
3' ss Score
10.57
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
AGGAAGAACTAGATTTACGACTTATCCGGACCAAGGGTGGTGTGGATGCTGCCTTGGAGTATGCCAAAGCATGGAGCCGCTATGCCAAGGAGCTACTGGCCTGGACAGACAAGAGAGCCAACTATG
Seq A exon
AGCTCGAGTTTGCGAAGAATATCATGAAGATCGCCGAGGCTGGCAAGGGATCCATTCTCCAGCAG
Seq C2 exon
AGCCAAATGCCACTCCAGTACATCTACACCTTGTTTCTGGAGCATGACCACAGCCTGGGTGCCCTGGCCATAGACACCGTGGCCCAGCAGAAGAGAGACTACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027257-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCTTGGAGTATGCCAAA
R:
TAGTCTCTCTTCTGCTGGGCC
Band lengths:
180-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]