BtaEX6036632 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015144 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
chr7:3615285-3615926:+
Coord C1 exon
chr7:3615285-3615360
Coord A exon
chr7:3615471-3615528
Coord C2 exon
chr7:3615801-3615926
Length
58 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCTCCCACCCCTCAGACC
3' ss Score
9.45
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GACTCTTGAGATGCTGGCTGGAGACCCTGTGATTTCAGGAGATCCAGAACCTGACAAGAACCCCACAGCCGCTTTG
Seq A exon
ACCAGTGAAACCAGCCGTTGGAGTGGCCCCTCCCCAGAGGATCCTGCACCCCTTACAG
Seq C2 exon
GGGAGGAACTGGACTTGCGGCTCATCCGAACCAAGGGGGGCGTGGATGCAGCCCTGGAGTATGCCAAGACCTGGAGCCGCTACGTCAAGGATTTGCTGGCCTGGACTGAGAAGAGAGCCAGTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015144-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=1.000 C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGAGATGCTGGCTGGAGA
R:
AGGTCTTGGCATACTCCAGGG
Band lengths:
145-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]