RnoEX6055348 @ rn6
Exon Skipping
Gene
ENSRNOG00000027257 | Gmip
Description
Gem-interacting protein [Source:RGD Symbol;Acc:1565577]
Coordinates
chr16:21360385-21361048:-
Coord C1 exon
chr16:21360961-21361048
Coord A exon
chr16:21360821-21360875
Coord C2 exon
chr16:21360385-21360510
Length
55 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTCTCTTACCCCAGAAC
3' ss Score
10.45
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GACTTTCGATCCCCTGGCTGGAGACCTTGTACTCAGAGAAGACCTGGAGCCTGACAAGACTGACACAGCTGCAGTGGAGACTGAGGAG
Seq A exon
AACAGTGAAGCCAGTTGGAGCAACCCCTCCCCAGAAGGCCCTGCACCCCTCACAG
Seq C2 exon
AGGAAGAACTAGATTTACGACTTATCCGGACCAAGGGTGGTGTGGATGCTGCCTTGGAGTATGCCAAAGCATGGAGCCGCTATGCCAAGGAGCTACTGGCCTGGACAGACAAGAGAGCCAACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027257-'7-5,'7-3,9-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=1.000 C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCCTGACAAGACTGACA
R:
CAGTAGCTCCTTGGCATAGCG
Band lengths:
142-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]