MmuEX0021280 @ mm10
Exon Skipping
Gene
ENSMUSG00000036246 | Gmip
Description
Gem-interacting protein [Source:MGI Symbol;Acc:MGI:1926066]
Coordinates
chr8:69810630-69811283:+
Coord C1 exon
chr8:69810630-69810717
Coord A exon
chr8:69810802-69810859
Coord C2 exon
chr8:69811158-69811283
Length
58 bp
Sequences
Splice sites
3' ss Seq
CTCTCATCCTCTTACCCTAGAAC
3' ss Score
8.86
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
AACTTTTGATCCCCTGGCTGGAGACCCTGTACGCAGAGAAGACCTGGAGCCTGACAAAGCTGACACAGCCACAGTGGTGACTGAGGAG
Seq A exon
AACAGTGAAGCCAGTAGTTGGCGGGATCTCTCCCCAGAAGGTCCTGCACCCCTCACAG
Seq C2 exon
AGGAAGAACTGGATTTGCGACTCATTCGGACCAAGGGTGGTGTAGATGCTGCCCTGGAGTATGCTAAAGCATGGAGCCGCTATGCCAAGGAACTGCTGGCCTGGACAGACAAGAGAGCCAACTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036246-'6-7,'6-5,8-7
Average complexity
ME(5_8-6_7[100=93])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=0.800 C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGACCTGGAGCCTGAC
R:
ATAGCGGCTCCATGCTTTAGC
Band lengths:
137-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types