HsaEX0027790 @ hg19
Exon Skipping
Gene
ENSG00000089639 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:24852]
Coordinates
chr19:19751255-19752860:-
Coord C1 exon
chr19:19752785-19752860
Coord A exon
chr19:19752619-19752676
Coord C2 exon
chr19:19751255-19751380
Length
58 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTCCCTCCCGCACAGACC
3' ss Score
9.59
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GACCCTTGAGATGCTGGCTGGAGACCCTCTACTCTCAGAAGACCCAGAACCTGACAAGACCCCTACAGCCACTGTT
Seq A exon
ACCAACGAAGCCAGCTGTTGGAGCGGCCCCTCCCCAGAGGGTCCTGTACCCCTCACAG
Seq C2 exon
GGGAGGAACTGGACTTGCGGCTCATTCGGACAAAGGGGGGTGTGGACGCAGCCCTGGAATATGCCAAGACCTGGAGCCGCTATGCCAAGGAACTGCTTGCCTGGACTGAAAAGAGAGCCAGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089639_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=1.000 C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACCCCTACAGCCACTGTT
R:
GGCTCTCTTTTCAGTCCAGGC
Band lengths:
140-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)