GgaEX1026766 @ galGal4
Exon Skipping
Gene
ENSGALG00000026345 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
JH376279.1:77105-78739:+
Coord C1 exon
JH376279.1:77105-77180
Coord A exon
JH376279.1:77824-77887
Coord C2 exon
JH376279.1:78614-78739
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTTGCCCCCATAGCCA
3' ss Score
9.21
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGCAGTGGATATGTTCATTGGGGACGCCGATGGCACTGGAGATGCAGAGCTGTCCACGGAAAGGGAGATCATTGTG
Seq A exon
CCAAGTGAAGATCTCTCCAAGAGCAAAAGCAGTTTGGAGAGACAAATGCAGGGAGACCTAACAG
Seq C2 exon
TGGAGGAGGCAGATGAAATGCTGATAAAATGCGAAGGTGGCATCGATGCGGCCCTGGAGTACGCCAAAATGTGGTGTAAATATGTCAAGGAGCTCCTCAGCTGGATCGAGAAACGCCTGAATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026345_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.458 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCACGGAAAGGGAGATCA
R:
CGTTTCTCGATCCAGCTGAGG
Band lengths:
141-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]