BtaEX6037099 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009331 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr7:6032431-6038440:+
Coord C1 exon
chr7:6032431-6032592
Coord A exon
chr7:6034491-6034633
Coord C2 exon
chr7:6038378-6038440
Length
143 bp
Sequences
Splice sites
3' ss Seq
GGGCGTTGTCTGTTGCCTAGGAA
3' ss Score
4.98
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTTTTCCGGGAATTGGAAGATTATGATGTTTCTGATATCTTTGGGGTGTCCAGGGAGGATGGACCCTTCTGGTGGACTGGGCTCACGGCCCGACGACGCCGGCGCTCCTCTGTCTTCCTGTGGCCCTGGGGCGTCACCAAGGATTCCGGATTTGCCTTTGCT
Seq A exon
GAAACAGGCCTGGTGGTGATGACGGACCTGGTGAGCCTAAACCACCGGCAGGACGGCGGCTTGTACACTGATGAGGCTGTCCCCGCCTTCCAGCCCCACACAGGGAGCCTGATGGCAGCCGTGTCCTCCAGACAGCCCCCCAG
Seq C2 exon
AGCAGAGAAGAGGAAAAGGACCTTCTTCCCTGAAACATGGGTTTGGCACTGTCTCAACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009331-'17-20,'17-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.228 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0020717=A2M=PU(9.8=40.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCCGGGAATTGGAAGATT
R:
GTTGAGACAGTGCCAAACCCA
Band lengths:
220-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]