DreEX6098957 @ danRer10
Exon Skipping
Gene
ENSDARG00000056530 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr22:21239733-21241074:+
Coord C1 exon
chr22:21239733-21239891
Coord A exon
chr22:21240766-21240908
Coord C2 exon
chr22:21241012-21241074
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTTGTGTACCCGTGTTGTAGGAG
3' ss Score
7.5
5' ss Seq
ACGGTACAC
5' ss Score
5.08
Exon sequences
Seq C1 exon
GTGTTCAAGGATCTGGCCGAGTTTGATGTATCTGATGCCTTTGGGGTACCCAAAGATGAGGGACATTTTTGGTGGCCCGGATTGTCTTCACGAAGGCGACGTTCCTCCGTGTTTCCATGGCACTGGGACATCACTAAAGATGCCCGTTTTGCTTTTACG
Seq A exon
GAGACAGGGCTGGTGGTGATGACAGACATGGTGAGTCTCAATCACAGACAGAGTGGAGGGATGTACACAGACGAGGCCGTACCTGCGTTTCAACCACACACCTCTACCCTGGTGGCAGCTATGCACTCCCGATCTGGGACACG
Seq C2 exon
GGCAGAGAACCGTAGGCGTACATTCTTTCCAGAAACATGGATATGGCATTGCTTTAATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056530-'17-24,'17-22,18-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.041 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0020717=A2M=PU(9.8=40.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCAAGGATCTGGCCGAG
R:
TGACATTAAAGCAATGCCATATCCA
Band lengths:
221-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]