GgaEX6028177 @ galGal3
Exon Skipping
Gene
ENSGALG00000003742 | CPAMD8
Description
NA
Coordinates
chr28:3779230-3781038:+
Coord C1 exon
chr28:3779230-3779391
Coord A exon
chr28:3780477-3780619
Coord C2 exon
chr28:3780973-3781038
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCTTCATTTTTATTACCTAGGAA
3' ss Score
8.96
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GTTTTCAAAGAGCTCGCAGAGTACGACGTGTCCGATGCCTTTGGAGCTCCGAAGGAGGAAGGGCACTTCTGGTGGCCAGGCATGTCCTCACGTCGACGCCGCAGATCTTCTGTCTTTCCCTGGCACTGGGATGTCACCAAGGATGCTCGCTTCGCCTTCACA
Seq A exon
GAAACCGGCTTGGTGGTGATGACGGATACAGTCAGCTTAAACCACAGGCAGAATGGAGGCATGTACACGGATGAGGCTGTCCCAGCTTTTCAGCCTCACACCGGGACATTGGTGGCCACAATGCGTTCTAAAATGGCACAGAG
Seq C2 exon
CAGAGCAGAGAAGAGAAAAAGAACCTTCTTTCCAGAAACGTGGATATGGCACTGCCTCAACGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003742-'15-18,'15-17,16-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0020717=A2M=PU(9.8=39.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGTACGACGTGTCCGAT
R:
GCAGTGCCATATCCACGTTTC
Band lengths:
202-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]