HsaEX0016933 @ hg19
Exon Skipping
Gene
ENSG00000160111 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:23228]
Coordinates
chr19:17068663-17086068:-
Coord C1 exon
chr19:17085907-17086068
Coord A exon
chr19:17081701-17081843
Coord C2 exon
chr19:17068663-17068725
Length
143 bp
Sequences
Splice sites
3' ss Seq
GGGTGTTGTCTGTTGCCTAGGAA
3' ss Score
5.51
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GTTTTCCAGGAACTGGAAGATTATGATGTTTCTGATTCCTTTGGCGTGTCCAGGGAGGATGGTCCTTTTTGGTGGGCTGGGCTGACGGCACAACGACGCCGGCGCTCCTCTGTCTTCCCGTGGCCTTGGGGCATCACCAAGGACTCTGGGTTTGCCTTCACC
Seq A exon
GAAACGGGACTGGTGGTGATGACCGACCGAGTGAGCCTGAACCACCGGCAGGACGGTGGCCTCTACACCGATGAGGCTGTCCCCGCTTTCCAGCCCCACACAGGGAGCCTGGTGGCAGTGGCTCCTTCCAGGCACCCCCCCAG
Seq C2 exon
AACAGAGAAGAGAAAAAGGACTTTCTTCCCCGAAACATGGATTTGGCATTGTCTCAACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160111-'16-17,'16-16,18-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.249 C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0020717=A2M=PU(9.8=40.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACTGGAAGATTATGATGTTTCT
R:
CTGATGTTGAGACAATGCCAAATCC
Band lengths:
218-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)