GgaEX6028177 @ galGal4
Exon Skipping
Gene
ENSGALG00000003742 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr28:3988766-3990574:+
Coord C1 exon
chr28:3988766-3988927
Coord A exon
chr28:3990013-3990155
Coord C2 exon
chr28:3990512-3990574
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCTTCATTTTTATTACCTAGGAA
3' ss Score
8.96
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GTTTTCAAAGAGCTCGCAGAGTACGACGTGTCCGATGCCTTTGGAGCTCCGAAGGAGGAAGGGCACTTCTGGTGGCCAGGCATGTCCTCACGTCGACGCCGCAGATCTTCTGTCTTTCCCTGGCACTGGGATGTCACCAAGGATGCTCGCTTCGCCTTCACA
Seq A exon
GAAACCGGCTTGGTGGTGATGACGGATACAGTCAGCTTAAACCACAGGCAGAATGGAGGCATGTACACGGATGAGGCTGTCCCAGCTTTTCAGCCTCACACCGGGACATTGGTGGCCACAATGCGTTCTAAAATGGCACAGAG
Seq C2 exon
AGCAGAGAAGAGAAAAAGAACCTTCTTTCCAGAAACGTGGATATGGCACTGCCTCAACGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003742-'13-19,'13-16,14-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.104 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0020717=A2M=PU(9.8=40.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTACGACGTGTCCGATG
R:
GCAGTGCCATATCCACGTTTC
Band lengths:
198-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]