BtaEX6037285 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002495 | BRD4
Description
bromodomain containing 4 [Source:HGNC Symbol;Acc:HGNC:13575]
Coordinates
chr7:8873859-8879272:+
Coord C1 exon
chr7:8873859-8874178
Coord A exon
chr7:8877668-8877805
Coord C2 exon
chr7:8879137-8879272
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTGCTCTCTCTCCTCTGCAGGAT
3' ss Score
12.48
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GATTGCCCAGTGAAGAATGTGATGGGATCAGTAGCATGTCTGCGGAGAGTGGCCCTGGGACGAGATTGAGAAATCTGCCAGTAATGGGGGATGGACTAGAAACTACCCAGATGTCTACAACGCAGGCCCAGGCCCAACCCCAGCAAGCCAACACAGCCAGCACCAACCCCCCTCCTCCGGAGACTTCCAACCCCAACAAGCCCAAGAGGCAGACCAACCAACTGCAATATCTGCTCAAAGTGGTGCTCAAGACACTATGGAAACACCAGTTTGCGTGGCCTTTCCAGCAGCCTGTGGATGCCGTCAAGCTAAACCTCCCT
Seq A exon
GATTACTATAAGATCATTAAAACACCTATGGATATGGGAACAATAAAGAAGCGCTTGGAAAACAACTATTACTGGAATGCTCAGGAATGTATCCAGGACTTCAACACTATGTTTACAAATTGTTACATCTACAACAAG
Seq C2 exon
CCTGGAGATGACATAGTCTTAATGGCAGAAGCTCTGGAGAAGCTCTTCTTGCAAAAAATCAACGAACTGCCCACTGAAGAAACTGAGATCGTGATAGTCCAGGCAAAAGGAAGAGGACGTGGGAGGAAAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002495-'1-5,'1-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=0.000 C2=0.413
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(32.6=29.5)
A:
PF0043920=Bromodomain=FE(52.3=100)
C2:
PF0043920=Bromodomain=PD(11.6=21.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAGGCAGACCAACCAAC
R:
CTGCTTCTTTCCTCCCACGTC
Band lengths:
255-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]