GgaEX6047582 @ galGal3
Exon Skipping
Gene
ENSGALG00000013295 | BRD4
Description
NA
Coordinates
chrUn_random:28088704-28092964:-
Coord C1 exon
chrUn_random:28092680-28092964
Coord A exon
chrUn_random:28091326-28091463
Coord C2 exon
chrUn_random:28088704-28088839
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTCTGCCCTCTGCAGGAT
3' ss Score
11.29
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATGTCTGCAGAGAGCGGCCCCGGGACGAGACTGAGAAATCTGCCAGTGATGGGCGACGGCCTGGAAGCCACACAGATGTCGACGGCGCAGGCGCAGGCGCAACCCCAGCAAGGCAGCACCGTCGGCGTCAACCCCCCTCCTCCAGAGACCTCCAACCCCAACAAACCCAAGCGGCAGACCAACCAGCTGCAGTACCTGCTCAAAGTGGTGCTCAAAACGCTATGGAAGCACCAGTTTGCGTGGCCTTTCCAGCAGCCCGTGGATGCTGTCAAGCTGAATCTCCCC
Seq A exon
GATTATTATAAGATAATTAAAACACCGATGGACATGGGAACAATAAAGAAACGCTTGGAGAATAACTACTACTGGAATGCTCAAGAATGTATCCAGGACTTTAACACGATGTTTACAAACTGTTACATCTACAATAAG
Seq C2 exon
CCAGGAGATGACATAGTCTTAATGGCAGAAGCTCTAGAAAAGCTCTTCCTGCAGAAAATCTCTGAAATGACGCAGGAGGAAACAGAAATCGTTATAGCCCAGACAAAAGGGAGAGGACGCGCACGGAAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013295-'5-6,'5-4,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.621 A=0.000 C2=0.435
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(32.6=29.5)
A:
PF0043920=Bromodomain=FE(52.3=100)
C2:
PF0043920=Bromodomain=PD(11.6=21.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACCCCAACAAACCCAAG
R:
GCGTCCTCTCCCTTTTGTCTG
Band lengths:
255-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]