RnoEX0015131 @ rn6
Exon Skipping
Gene
ENSRNOG00000006770 | Brd4
Description
bromodomain containing 4 [Source:RGD Symbol;Acc:1307282]
Coordinates
chr7:14250995-14256219:-
Coord C1 exon
chr7:14255901-14256219
Coord A exon
chr7:14252490-14252627
Coord C2 exon
chr7:14250995-14251130
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTCTCTGCTCCTCAGGAT
3' ss Score
9.62
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGTGCCTGGTGAAGAATGTGATGGGATCACTAGCATGTCTACGGAGAGCGGCCCTGGGACAAGATTGAGAAATCTGCCAGTAATGGGGGATGGACTAGAAACCTCCCAAATGTCTACAACGCAGGCCCAGGCCCAACCCCAGTCAGCAAATGCAGCCAGCACCAATCCTCCACCCCCAGAGACCTCCAACCCTAACAAGCCCAAGAGGCAGACCAACCAACTGCAATATCTGCTCAGAGTGGTGCTCAAGACACTATGGAAACACCAGTTTGCGTGGCCTTTCCAGCAGCCTGTGGATGCCGTCAAGCTGAACCTCCCT
Seq A exon
GATTACTATAAGATTATTAAAACACCCATGGATATGGGAACAATAAAGAAGCGCTTGGAAAACAACTATTACTGGAATGCTCAGGAATGTATCCAGGACTTCAACACTATGTTTACAAATTGTTACATCTATAACAAG
Seq C2 exon
CCTGGAGATGACATCGTCTTAATGGCAGAAGCTCTGGAGAAGCTCTTCTTGCAGAAAATCAATGAACTGCCTACAGAAGAAACCGAGATCATGATAGTCCAGGCAAAGGGACGAGGACGAGGGAGGAAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006770-'9-13,'9-9,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=0.000 C2=0.413
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(32.6=29.5)
A:
PF0043920=Bromodomain=FE(52.3=100)
C2:
PF0043920=Bromodomain=PD(11.6=21.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGTCTACAACGCAGGCCC
R:
GAGCTTCTCCAGAGCTTCTGC
Band lengths:
257-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]