DreEX6019006 @ danRer10
Exon Skipping
Gene
ENSDARG00000078904 | brd4
Description
bromodomain containing 4 [Source:ZFIN;Acc:ZDB-GENE-030131-267]
Coordinates
chr3:52937716-52942147:+
Coord C1 exon
chr3:52937716-52938085
Coord A exon
chr3:52941785-52941922
Coord C2 exon
chr3:52942012-52942147
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTGCTACCTTCGTTTCCCAGGAC
3' ss Score
9.58
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
AGAGCCCAGCGAGGAGTGCAATGGAATTAGCGGTGCTCTCTCTGTGGAGCCCGCGCCCGGCTCGAGACTGAACGAGTGGTGTCCTGCGCCACCCCCTCCCATCCCTCTGCCCGCGCTCCACCCCGCCAGTATGGGGGACGGCCTGGACGCAGTTCAGATGTCGGGGAGCAGCAGCAGTCAGGGGCAGCCCTCGTCCCAGGCCCCTTCTTCCTTCAACCCGAATCCCCCAGAAACCTCCAACCCCACCCGGCCCAAGCGCCAGACCAACCAGCTGCAGTACCTGCTGAAGGTGGTGCTGAAGAGTCTTTGGAAGCACCAGTTCGCTTGGCCTTTTCATGCTCCTGTCGACGCCGTTAAGCTAAATCTGCCT
Seq A exon
GACTATTACAAGATAATCAAAAACCCTATGGACATGGGAACAATCAAGAAACGCCTAGAGAGCGCATTCTACACCAGTGCCCAAGAATGTATTCAAGACTTCAACACCATGTTTACCAACTGCTACATTTACAATAAG
Seq C2 exon
CCTGGGGATGACATAGTCTTAATGGCCGAAGCACTGGAGAAGGTGTTCCTTACCAAGATTTCAGAGATGCCCCAGCAGGAGGTTGAAATATCCACCACGGCCGGCAAAGGTCGTGGCCGGGGCAGGAGGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078904-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.592 A=0.000 C2=0.435
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(32.6=22.6)
A:
PF0043920=Bromodomain=FE(52.3=100)
C2:
PF0043920=Bromodomain=PD(11.6=21.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCCCTTCTTCCTTCAAC
R:
TGCTGGGGCATCTCTGAAATC
Band lengths:
251-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]