MmuEX0008208 @ mm9
Exon Skipping
Gene
ENSMUSG00000024002 | Brd4
Description
bromodomain containing 4 [Source:MGI Symbol;Acc:MGI:1888520]
Coordinates
chr17:32361032-32366680:-
Coord C1 exon
chr17:32366362-32366680
Coord A exon
chr17:32362521-32362658
Coord C2 exon
chr17:32361032-32361167
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTGATTTCTTTGCTCCTCAGGAT
3' ss Score
9.38
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGTGCCTGGTGAAGAATGTGATGGGATCACTAGCATGTCTACGGAGAGCGGCCCTGGGACAAGATTGAGAAATCTGCCAGTAATGGGGGATGGACTAGAAACCTCCCAAATGTCTACAACGCAGGCCCAGGCCCAACCCCAGCCAGCAAATGCAGCCAGCACCAATCCTCCACCCCCAGAGACCTCCAACCCTAACAAGCCCAAGAGACAGACAAACCAACTGCAATATCTGCTCAGAGTGGTGCTCAAGACACTATGGAAACACCAGTTTGCGTGGCCTTTCCAGCAGCCCGTGGATGCCGTCAAGCTGAACCTCCCT
Seq A exon
GATTACTATAAGATTATTAAAACACCCATGGATATGGGAACAATAAAGAAGCGCTTGGAAAACAACTATTACTGGAATGCTCAGGAATGTATCCAGGACTTCAACACTATGTTTACAAATTGTTACATCTATAACAAG
Seq C2 exon
CCTGGAGATGACATCGTCTTAATGGCAGAAGCTCTGGAGAAGCTCTTCTTGCAAAAAATCAATGAACTGCCTACAGAAGAAACTGAGATCATGATAGTCCAGGCAAAAGGAAGAGGACGAGGGAGGAAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024002-'11-16,'11-12,12-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=0.000 C2=0.414
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(32.6=29.5)
A:
PF0043920=Bromodomain=FE(52.3=100)
C2:
PF0043920=Bromodomain=PD(11.6=21.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGTCTACAACGCAGGCCC
R:
GAGCTTCTCCAGAGCTTCTGC
Band lengths:
257-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: