BtaEX6037288 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043971 | NOTCH3
Description
notch 3 [Source:HGNC Symbol;Acc:HGNC:7883]
Coordinates
chr7:8963676-8970307:+
Coord C1 exon
chr7:8963676-8963823
Coord A exon
chr7:8968336-8968433
Coord C2 exon
chr7:8969252-8970307
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTCACTTCCCCACAGGAA
3' ss Score
11.36
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATTCTTATCCGGAACCGCTCTACAGACCTGGATGCTCGCATGGCAGACGGCTCCACGGCACTGATCCTGGCAGCCCGCCTGGCGGTGGAGGGCATGGTGGAAGAGCTCATCGCCAGCCATGCTGATGTCAATGCTGTGGATGAGCTCG
Seq A exon
GAAAATCGGCCTTACACTGGGCTGCAGCTGTCAACAACGTGGAGGCCACCTTGGCTCTGCTCAAAAATGGAGCCAACAAGGACATGCAGGATAGCAAG
Seq C2 exon
GAAGAGACTCCACTGTTCCTGGCCGCCCGGGAGGGCAGCTTCGAGGCGGCCAAGCTGCTGCTAGACCACTTTGCCAACCGGGAGATCACAGACCACCTGGACAGGCTGCCCCGGGACGTGGCCCAGGAGAGGCTGCACCAGGATATCGTGCGCTTGCTGGACCAGCCCAGCGGGCCCCGTAGCCCCGCTGGCCCCCACGGCCTGGGGCCCTTGCTCTGTCCCCCCGGGGCCTTCCTCCCCGGCCTCAAGGTGGCGCAGTCCGGGGCTAAGAAGAGCCGGAGGCCCCCGGGGAAGGCGGGGCTGGGGCCGCAGGGCACCCGGGGGCGGGGCAAGAAGCTGACGCTGGCCTGCCCCGGGCCCTTGGCCGACAGCTCGGTCACGCTCTCGCCCGTGGACTCGCTGGACTCCCCGCGGCCCTTTGGCGGGCCCCCCGCGTCCCCTGGCGGCTTCCCCCTCGAGGGGCCCTACGCGGCCGCCACGGCCACGGCTGTGTCTCTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043971-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.303 C2=0.772
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(14.1=26.0),PF127962=Ank_2=PU(31.2=58.0)
A:
PF127962=Ank_2=FE(34.4=100)
C2:
PF127962=Ank_2=PD(32.3=8.5),PF119363=DUF3454=WD(100=18.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGCTGTGGATGAGCTCG
R:
ATATCCTGGTGCAGCCTCTCC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]