RnoEX0060479 @ rn6
Exon Skipping
Gene
ENSRNOG00000004346 | Notch3
Description
notch 3 [Source:RGD Symbol;Acc:620761]
Coordinates
chr7:14138495-14151965:-
Coord C1 exon
chr7:14151842-14151965
Coord A exon
chr7:14142453-14142550
Coord C2 exon
chr7:14138495-14139801
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGGTGTTTATCTCCTTACAGGGA
3' ss Score
9.82
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
NACCTGGATGCCCGAATGGCAGATGGCTCTACTGCATTGATCCTGGCAGCCCGCCTGGCGGTGGAGGGAATGGTGGAAGAGCTCATCGCCAGCCACGCCGATGTCAATGCAGTGGATGAGCTCG
Seq A exon
GGAAATCGGCCTTACACTGGGCTGCAGCCGTGAACAATGTGGAGGCTACCTTGGCCCTGCTGAAAAATGGAGCCAACAAGGACATGCAGGACAGCAAG
Seq C2 exon
GAGGAGACTCCACTGTTCTTGGCCGCCCGTGAGGGCAGCTATGAGGCTGCCAAGCTGCTGCTGGATCATTTTGCCAACCGGGAGATCACAGATCACTTGGACAGGCTGCCCCGGGATGTGGCCCAGGAGCGGCTGCACCAGGACATTGTGCGGTTGCTGGACCAGCCCAGTGGCCCCCGAAGTCCCTCTGGTCCCCATGGCTTGGGGCCATTGCTCTGCCCACCAGGAGCCTTCCTTCCTGGCCTCAAAGCGGTGCAGTCTGGGACCAAGAAGAGCAGGAGGCCACCTGGCAAGACTGGGCTGGGGCCCCAGGGAACTCGGGGTCGGGGCAAGAAGCTGACACTGGCCTGTCCAGGCCCTCTGGCAGACAGCTCTGTCACACTGTCACCAGTGGACTCGCTGGACTCACCACGGCCTTTCGGTGGGCCCCCTGCTTCCCCTGGAGGCTTCCCCTTGGAGGGTCCCTATGCCACCACAGCCACCACGGTGTCCTTGGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004346-'39-40,'39-39,40-40
Average complexity
S
Mappability confidence:
80%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.303 C2=0.832
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(5.5=11.9),PF127962=Ank_2=PU(31.2=69.0)
A:
PF127962=Ank_2=FE(34.4=100)
C2:
PF127962=Ank_2=PD(32.3=8.6),PF119363=DUF3454=WD(100=21.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGCATTGATCCTGGCAGC
R:
GCAAAATGATCCAGCAGCAGC
Band lengths:
169-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]