MmuEX6076748 @ mm9
Exon Skipping
Gene
ENSMUSG00000038146 | Notch3
Description
Notch gene homolog 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:99460]
Coordinates
chr17:32257765-32269294:-
Coord C1 exon
chr17:32269147-32269294
Coord A exon
chr17:32261227-32261324
Coord C2 exon
chr17:32257765-32259805
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGATGTTTATCTCCTTACAGGGA
3' ss Score
9.96
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATTCTCATCAGGAACCGCTCCACTGACCTGGATGCCCGAATGGCAGATGGCTCTACTGCACTGATCCTGGCAGCCCGCCTGGCAGTGGAGGGCATGGTGGAAGAGCTCATCGCCAGCCATGCCGATGTCAATGCAGTGGATGAGCTTG
Seq A exon
GGAAATCTGCCTTACACTGGGCTGCAGCTGTGAACAACGTGGAGGCTACCTTGGCTCTGCTGAAAAATGGAGCCAACAAGGACATGCAGGACAGCAAG
Seq C2 exon
GAAGAGACGCCGCTGTTCTTGGCCGCTCGGGAGGGCAGCTATGAGGCTGCCAAGCTGCTGCTGGATCATCTCGCCAACCGGGAGATCACAGATCACTTGGACAGGCTGCCCCGGGACGTGGCCCAGGAGCGGCTGCACCAGGACATTGTGCGGTTGCTGGACCAGCCCAGTGGACCTCGAAGTCCCTCTGGTCCCCATGGCTTAGGGCCATTGCTCTGCCCACCAGGGGCCTTCCTTCCTGGCCTCAAAGCGGTGCAGTCTGGGACCAAGAAGAGCAGGAGGCCACCTGGCAAGACCGGGCTGGGGCCACAGGGAACTCGTGGTCGGGGCAAGAAGCTGACACTAGCCTGTCCAGGACCTCTGGCAGACAGCTCTGTCACACTGTCACCGGTGGACTCTCTGGACTCACCACGGCCTTTCAGTGGGCCCCCTGCTTCCCCTGGAGGCTTCCCCTTGGAGGGCCCCTATGCCACCACGGCCACCGCGGTGTCCTTGGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038146-'36-44,'36-42,37-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.821
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(14.1=26.0),PF127962=Ank_2=PU(30.9=58.0)
A:
PF127962=Ank_2=FE(34.0=100)
C2:
PF127962=Ank_2=PD(33.0=8.9),PF119363=DUF3454=WD(100=19.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGGTGGAAGAGCTCATC
R:
GCAGCCTGTCCAAGTGATCTG
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: