DreEX0051139 @ danRer10
Exon Skipping
Gene
ENSDARG00000052139 | notch3
Description
notch 3 [Source:ZFIN;Acc:ZDB-GENE-000329-5]
Coordinates
chr3:53275051-53277574:-
Coord C1 exon
chr3:53277427-53277574
Coord A exon
chr3:53276902-53276999
Coord C2 exon
chr3:53275051-53276813
Length
98 bp
Sequences
Splice sites
3' ss Seq
ACATGGATTTCTTTTCACAGGAA
3' ss Score
8.8
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
ATTCTGATCAGGAACCGTGCCACAGACTTGGACGCGCGCATGTATGATGGCTCCACTGCTCTGATACTTGCAGCCCGTCTGGCAGTAGAGGGCATGGTGGAAGAGTTGATCACCTGCCATGCTGATGTTAATGCTGTTGATGAAATCG
Seq A exon
GAAAGTCAGCATTGCACTGGGCAGCAGCAGTCAATAACGTTGAAGCTACTATTGCCTTGTTGAAGAATGGTGCCAATAAAGATATGCAAGACCTCAAG
Seq C2 exon
GAGGAGACTCCGCTGTTCTTGGCTGCCAGGGAAGGCAGCTGTGAGGCAGTAAAGGTGTTGTTGGCTCACTTTGCCAATAGGGAAATAACAGATCACATGGACAGACTCCCTCGAGATATTGCCCAGGAGCGCATGCATCATGACATTGTGCAGCTACTGGATGAATATAACACTGTGCGAAGTCCACAGGGTCATGCAGGGGCAGGTCACCACCTCTCTGGTAGCCACACACTCTCACCGCTCATGTGCCCTCCCAGCAACTTCCTCCAAGGGCTGAAAAGTACCCCTCAGGGTAAGAAGAACCGTCGCCCGGGAGCTAAAGGCATTGGTGGACAGCACGCTTCCGGCCTGAAAGATTCAGCCAAAGGACGCAACAAACGGCTGACTCTAGACATGCAGAGTGCTTTGCTGGATAGCTCTGTCACGCTCTCCCCTGTTGACTCACTGGATTCACCACGTGGAGGCGCCAGTAACGCTGGCTACGTCACCAATCCAACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052139-'36-39,'36-38,37-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.832
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(14.4=26.0),PF127962=Ank_2=PU(31.2=58.0)
A:
PF127962=Ank_2=FE(34.4=100)
C2:
PF127962=Ank_2=PD(32.3=6.1),PF119363=DUF3454=WD(100=12.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGATCACCTGCCATGCTG
R:
CCTGGGCAATATCTCGAGGGA
Band lengths:
172-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]