GgaEX6015410 @ galGal4
Exon Skipping
Gene
ENSGALG00000002375 | NOTCH1
Description
notch 1 [Source:HGNC Symbol;Acc:HGNC:7881]
Coordinates
chr17:7840174-7842342:+
Coord C1 exon
chr17:7840174-7840321
Coord A exon
chr17:7840414-7840511
Coord C2 exon
chr17:7840748-7842342
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTCCTGGCCTTCCCCTGTAGGCA
3' ss Score
10.28
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATCCTGATAAGGAACAGGGCGACTGATCTCGATGCCCGAATGCACGATGGGACGACCCCACTGATCCTGGCTGCTCGCTTGGCTGTGGAGGGGATGCTGGAGGACCTCATCAACTGCCACGCAGACGTCAACGCTGTGGATGATCTGG
Seq A exon
GCAAGTCAGCACTGCACTGGGCAGCTGCTGTGAACAATGTCGAAGCCGCTGTCGTCCTCCTGAAGAACGGTGCCAATAAGGATATGCAGAACAATAAG
Seq C2 exon
GAGGAGACCCCGCTGTTCCTCGCCGCCAGAGAAGGGAGCTACGAAACAGCCAAGGTTCTGCTGGACCACTTTGCGAACCGCGACATCACGGACCACATGGACCGGCTGCCGCGGGACATCGCGCAGGAGCGCATGCACCACGACATCGTGCGGCTGCTGGATGAGTACAACCTGGTGCGGAGCCCTCCGCTGCACAGCGGCCCTCTCGGGGCCCCCACGCTGTCCCCCCCGCTCTGCTCCCCCAGCAGTTACATCGGCAACCTGAAGCCGGCCGTGCAGGGCAAGAAGGCCAGGAAGCCGAGCACCAAGGGCCTGAGCTGCAACGGCAAGGATTCCAAAGACCTGAAAGCCCGGAGGAAAAAATCACAAGATGGAAAAGGCTGTCTGCTCGACAACTCCAGCGTGCTGTCCCCAGTGGACTCCCTGGAGTCACCCCACGGGTACCTGTCCGACGTCGCCTCCCCTCCGCTGATGACTTCTCCGTTCCAGCAGTCCCCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002375-'35-38,'35-37,36-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.212 C2=0.833
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(14.3=26.0),PF127962=Ank_2=PU(31.2=58.0)
A:
PF127962=Ank_2=FE(34.4=100)
C2:
PF127962=Ank_2=PD(32.3=6.1),PF119363=DUF3454=WD(100=13.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTGATCTCGATGCCCGA
R:
GGCTGTTTCGTAGCTCCCTTC
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]